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deprecated Data Set Module Chronic Diseases 2.16.840.1.113883.3.1937.777.64.1.4

Name Id
deprecated Module Chronic Diseases 2.16.840.1.113883.3.1937.777.64.1.4
Effective date Expiration date
2023‑09‑11 19:06:50
Description

NFDI4Health LogicalModel Epidemiology of Chronic Diseases Metadataschema (Use Case 5.2) V3

Name Details [‑]
folder deprecated ChronicDiseasesEpidemiology
nfdhtfcov19-dataelement-117
Id nfdhtfcov19-dataelement-117 (2023‑09‑29 10:19:04)
Synonym
chronic_diseases_epidemiology
Description

Chronic disease data collection

Properties

No 3_0

CD1

Rationale

Description: Group of items providing information on chronic disease data collection.

Source

NFDI4Health UC 5.2 requirements

Comment

Cardinality: 1..*, if chronic_diseases == "Yes" AND resource_type == ("Study protocol" OR "Protocol amendment" OR "Informed consent form" OR "Patient information sheet" OR "Manual of operations (SOPs)" OR "Statistical analysis plan" OR "Data management plan" OR "Case report form" OR "Interview scheme and themes" OR "Observation guide" OR "Discussion guide" OR "Participant tasks" OR "Other study document" OR "Other"); otherwise 0.. 0

Comment

Display information? (Data capturing): yes

Display information? (Data visualization): yes

deprecated commonChronicDiseaseName
nfdhtfcov19-dataelement-102
Id nfdhtfcov19-dataelement-102 (2023‑09‑11 19:06:50)
Synonym
common_chronic_disease_name
Description

On which of the following common chronic diseases were data collected?

Properties

No 3_0

CD1.1

Rationale

Description: Common chronic diseases on which data were collected in the study.

Additional information: The values originate from the following sources: 1) 10 types of cancer with the highest incidence in Germany, by gender, based on 2017/2018 German cancer registry data (RKI, Zentrum für Krebsregisterdaten, https://www.krebsdaten.de/); 2) 10 cardiovascular diseases with highest mortality in Germany in 2020 (www.destatis.de). All values follow the classifiction system ICD-11 (WHO's International Statistical Classification of Diseases and Related Health Problems, 11th Revision (ICD-11), https://icd.who.int/en).

Source

NFDI4Health UC 5.2 requirements

ICD-11 [ https://icd.who.int/browse11/l-m/en]

Zentrum für Krebsregisterdaten [ https://www.krebsdaten.de/]

Statistisches Bundesamt [ https://www.destatis.de/]

Comment

Cardinality: 1..1

Comment

Display information? (Data capturing): yes

Display information? (Data visualization): yes

Operationalization

Short input help: Select one value from the list.

Value Domain Code
Choice list
Concept List
Concept Description Assigned references
Non-hodgkin lymphoma (mature B-cell neoplasms: 2A80-2A86, 2A8Z; mature T-cell or NK-cell neoplasms: 2A90, 2B00-2B03, 2B0Y, 2B0Z, 2B2Y, 2B2Z)
code "118601006" (Non-Hodgkin's lymphoma (disorder)) from code system "SNOMED Clinical Terms"
Malignant neoplasms of lip, oral cavity or pharynx  (2B60-69, 2B6A-Z)
code "271323007" (Malignant neoplasm of lip, oral cavity and/or pharynx (disorder)) from code system "SNOMED Clinical Terms"
Malignant neoplasms of stomach (2B72)
code "372014001" (Primary malignant neoplasm of stomach (disorder)) from code system "SNOMED Clinical Terms"
Malignant neoplasms of large intestine (2B90-2B93, 2B9Y)
code "93854002" (Primary malignant neoplasm of large intestine (disorder)) from code system "SNOMED Clinical Terms"
Malignant neoplasms of pancreas (2C10)
code "372003004" (Primary malignant neoplasm of pancreas (disorder)) from code system "SNOMED Clinical Terms"
Malignant neoplasms of trachea, bronchus and lung (2C24, 2C25)
code "93986008" (Primary malignant neoplasm of respiratory tract (disorder)) from code system "SNOMED Clinical Terms"
Malignant melanoma of skin (2C30)
code "93655004" (Malignant melanoma of skin (disorder)) from code system "SNOMED Clinical Terms"
Malignant neoplasms of breast  (2C60-2C65, 2C6Y, 2C6Z)
code "254837009" (Malignant neoplasm of breast (disorder)) from code system "SNOMED Clinical Terms"
Malignant neoplasms of corpus uteri, cervix uteri, and uterus, part not specified (2C76-78)
code "371973000" (Malignant neoplasm of uterus (disorder)) from code system "SNOMED Clinical Terms"
Malignant neoplasm of ovary (2C73)
code "93934004" (Primary malignant neoplasm of ovary (disorder)) from code system "SNOMED Clinical Terms"
Malignant neoplasms of prostate (2C82)
Malignant neoplasms of kidney (2C90)
Malignant neoplasms of bladder (2C94)
Type 2 Diabetes mellitus   (5A11-14)
Disorders of lipoprotein metabolism or certain specified lipidaemias  (5C80, 5C81, 5C8Y, 5C8Z)
Hypertensive diseases (BA00-BA04)
Ischaemic heart diseases (BA40-43, BA50-52, BA60)
Heart valve diseases  (BB60-65, BB70-74, BB80-84, BB90-93, BC00-02)
Cardiac arrhythmia (BC60-65, BC70-71, BC80-81, BC90-91, MC82)
Heart failure  (BD10-14)
Cerebrovascular diseases (8B00-03, 8B0Z, 8B10-11, 8B1Y, 8B1Z, 8B2Z, 8B20-26, BD55, BD56)
Diseases of the circulatory system falling into multiple categories
Data not collected for any of the above-listed diseases

Value Set required NFDI4Health_VS_MDS_CD_CommonChronicDiseaseName_SNOMEDCT (version 2023‑10‑10 11:18:06)
deprecated dataCollected
nfdhtfcov19-dataelement-118
Id nfdhtfcov19-dataelement-118 (2023‑09‑29 10:28:52)
Synonym
data_collected
Description

Type of data collected

Properties

No 3_0

CD1.2

Rationale

Description: Type of data collected.

Source

NFDI4Health UC 5.2 requirements

Comment

Cardinality: 1..1

Comment

Display information? (Data capturing): yes

Display information? (Data visualization): yes

Operationalization

Short input help: Select one value from the list.

Value Domain Code
Choice list
Concept List
Concept Description Assigned references
Prevalent

Persons in a population who have a particular disease or attribute at a specified point in time or over a specified period of time [CDC.gov (https://www.cdc.gov/csels/dsepd/ss1978/lesson3/section2.html)].

code "C0033105" (Statistical Prevalence) from code system "Unified Medical Language System"
Incident

Occurrence of new cases of disease or injury in a population over a specified period of time [CDC.gov (https://www.cdc.gov/csels/dsepd/ss1978/lesson3/section2.html)].

code "C0021149" (Incidence) from code system "Unified Medical Language System"

Value Set required NFDI4Health_VS_MDS_CD_DataCollected_UMLS (version 2023‑10‑10 10:56:44)
deprecated informationSources
nfdhtfcov19-dataelement-119
Id nfdhtfcov19-dataelement-119 (2023‑09‑29 10:31:15)
Synonym
information_sources
Description

From which source(s) are the data generated/extracted?

Properties

No 3_0

CD1.3

Rationale

Description: Source(s) from which information is generated/extracted.

Additional information: Treat prevalent and incident diseases separately (selected values should be specific for prevalent diseases and then separately incident diseases).

Source

NFDI4Health UC 5.2 requirements

Comment

Cardinality: 1..*

Comment

Display information? (Data capturing): yes

Display information? (Data visualization): yes

Operationalization

Short input help: Select all that apply.

Value Domain Code
Choice list
Concept List
Concept Description Assigned references
Self-report (questionnaires or interviews), cases verified

A method of data collection which involves asking a participant, for example, through questionnaires or interviews. The collected information is then verified by asking the treating physician, through administrative databases (e.g., health insurance data), or clinical examinations [NFDI4Health].

code "116" (Self-report (questionnaires or interviews), cases verified) from code system "NFDI4Health_CS_MDS_Remaining_Concepts"
Self-report (questionnaires or interviews), cases not verified

A method of data collection which involves asking a participant, for example, through questionnaires or interviews. The collected information is not verified by any external information or clinical examinations [NFDI4Health].

code "117" (Self-report (questionnaires or interviews), cases not verified) from code system "NFDI4Health_CS_MDS_Remaining_Concepts"
Administrative databases

Information about administrative data [Maelstrom (doi: 10.1371/journal.pone.0200926)].

code "C0242356" (Databases) from code system "Unified Medical Language System"
Biosamples

A sample of material, such as urine, blood, tissue, cells, DNA, RNA, or protein, from the study subject [NCI Dictionary of Cancer Terms (https://www.cancer.gov/publications/dictionaries/cancer-terms)].

code "C1706958" (Biosample) from code system "Unified Medical Language System"
Physical measures (e.g., clinical examination)

Information about physical functioning. Information in this domain is generally measured [Maelstrom (doi: 10.1371/journal.pone.0200926)].

code "C0031809" (Physical Examination) from code system "Unified Medical Language System"
Other

Sources of data other than self-report, administrative databases, biosamples and physical measures [NFDI4Health].

code "C0205394" (Other (Qualitative Concept)) from code system "Unified Medical Language System"

Value Set required NFDI4Health_VS_MDS_CD_Information_Sources_UMLS_Local (version 2023‑10‑10 12:32:23)